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ci: add coverage and ruff (#1383)

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* add coverage calculation and push

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* new codecov version and usage of token

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* enable ruff formatter instead of black and isort

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* apply ruff lint fixes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* apply ruff unsafe fixes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* add removed imports

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* runs 1 on linter issues

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* finalize linter fixes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* Update pyproject.toml

Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
This commit is contained in:
Michele Dolfi
2025-04-14 18:01:26 +02:00
committed by GitHub
parent 293c28ca7c
commit 5458a88464
104 changed files with 665 additions and 633 deletions
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8
tests/test_backend_jats.py
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@@ -15,7 +15,7 @@ GENERATE = GEN_TEST_DATA
def get_pubmed_paths():
directory = Path(os.path.dirname(__file__) + f"/data/pubmed/")
directory = Path(os.path.dirname(__file__) + "/data/pubmed/")
xml_files = sorted(directory.rglob("*.xml"))
return xml_files
@@ -47,9 +47,9 @@ def test_e2e_pubmed_conversions(use_stream=False):
pred_itxt: str = doc._export_to_indented_text(
max_text_len=70, explicit_tables=False
)
assert verify_export(
pred_itxt, str(gt_path) + ".itxt"
), "export to indented-text"
assert verify_export(pred_itxt, str(gt_path) + ".itxt"), (
"export to indented-text"
)
assert verify_document(doc, str(gt_path) + ".json", GENERATE), "export to json"