feat: Expose equation exports (#869)

* pin new docling-core and exploit it via assembler changes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* update test results

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* update with docling-core release

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

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Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

tests/data/groundtruth/docling_v2/pone.0234687.xml.md

@@ -62,7 +62,7 @@ The CH4 emissions from enteric fermentation intensity (g (kg ECM)-1) was a funct
 
 The CH4 emission from manure (kg (kg ECM)-1) was a function of daily CH4 emission from manure (kg cow-1) and daily ECM (kg cow-1). The daily CH4 emission from manure was estimated according to IPCC [38], which considered daily volatile solid (VS) excreted (kg DM cow-1) in manure. The daily VS was estimated as proposed by Eugène et al. [44] as: VS = NDOMI + (UE × GE) × (OM/18.45), where: VS = volatile solid excretion on an organic matter (OM) basis (kg day-1), NDOMI = non-digestible OM intake (kg day-1): (1- OM digestibility) × OM intake, UE = urinary energy excretion as a fraction of GE (0.04), GE = gross energy intake (MJ day-1), OM = organic matter (g), 18.45 = conversion factor for dietary GE per kg of DM (MJ kg-1).
 
-The OM digestibility was estimated as a function of chemical composition, using equations published by INRA [21], which takes into account the effects of digestive interactions due to feeding level, the proportion of concentrate and rumen protein balance on OM digestibility. For scenarios where cows had access to grazing, the amount of calculated VS were corrected as a function of the time at pasture. The biodegradability of manure factor (0.13 for dairy cows in Latin America) and methane conversion factor (MCF) values were taken from IPCC [38]. The MCF values for pit storage below animal confinements (> 1 month) were used for the calculation, taking into account the annual average temperature (16.6ºC) or the average temperatures during the growth period of temperate (14.4ºC) or tropical (21ºC) annual pastures, which were 31%, 26% and 46%, respectively.
+The OM digestibility was estimated as a function of chemical composition, using equations published by INRA [21], which takes into account the effects of digestive interactions due to feeding level, the proportion of concentrate and rumen protein balance on OM digestibility. For scenarios where cows had access to grazing, the amount of calculated VS were corrected as a function of the time at pasture. The biodegradability of manure factor (0.13 for dairy cows in Latin America) and methane conversion factor (MCF) values were taken from IPCC [38]. The MCF values for pit storage below animal confinements (> 1 month) were used for the calculation, taking into account the annual average temperature (16.6ºC) or the average temperatures during the growth period of temperate (14.4ºC) or tropical (21ºC) annual pastures, which were 31%, 26% and 46%, respectively.
 
 The N2O-N emissions from urine and feces were estimated considering the proportion of N excreted as manure and storage or as urine and dung deposited by grazing animals. These proportions were calculated based on the proportion of daily time that animals stayed on pasture (7 h/24 h = 0.29) or confinement (1−0.29 = 0.71). For lactating heifers and cows, the total amount of N excreted was calculated by the difference between N intake and milk N excretion. For heifers and non-lactating cows, urinary and fecal N excretion were estimated as proposed by Reed et al. [45] (Table 3: equations 10 and 12, respectively). The N2O emissions from stored manure as well as urine and dung during grazing were calculated based on the conversion of N2O-N emissions to N2O emissions, where N2O emissions = N2O-N emissions × 44/28. The emission factors were 0.002 kg N2O-N (kg N)-1 stored in a pit below animal confinements, and 0.02 kg N2O-N (kg of urine and dung)-1 deposited on pasture [38]. The indirect N2O emissions from storage manure and urine and dung deposits on pasture were also estimated using the IPCC [38] emission factors.
 
@@ -106,7 +106,7 @@ The lower C footprint in scenarios with access to pasture, when local emission f
 
 The enteric CH4 intensity was similar between different scenarios (Fig 2), showing the greatest sensitivity index, with values ranging from 0.53 to 0.62, which indicate that for a 10% change in this source, the C footprint may change between 5.3 and 6.2% (Fig 3). The large effect of enteric CH4 emissions on the whole C footprint was expected, because the impact of enteric CH4 on GHG emissions of milk production in different dairy systems has been estimated to range from 44 to 60% of the total CO2e [50,52,57,58]. However, emissions in feed production may be the most important source of GHG when emission factors for producing concentrate feeds are greater than 0.7 kg CO2e kg-1 [59], which did not happen in this study.
 
-The lack of difference in enteric CH4 emissions in different systems can be explained by the narrow range of NDF content in diets (<4% difference). This non-difference is due to the lower NDF content of annual temperate pastures (495 g (kg DM)-1) compared to corn silage (550 g (kg DM)-1). Hence, an expected, increase NDF content with decreased concentrate was partially offset by an increase in the pasture proportion relatively low in NDF. This is in agreement with studies conducted in southern Brazil, which have shown that the actual enteric CH4 emissions may decrease with inclusion of temperate pastures in cows receiving corn silage and soybean meal [60] or increase enteric CH4 emissions when dairy cows grazing a temperate pasture was supplemented with corn silage [61]. Additionally, enteric CH4 emissions did not differ between dairy cows receiving TMR exclusively or grazing a tropical pasture in the same scenarios as in this study [26].
+The lack of difference in enteric CH4 emissions in different systems can be explained by the narrow range of NDF content in diets (&lt;4% difference). This non-difference is due to the lower NDF content of annual temperate pastures (495 g (kg DM)-1) compared to corn silage (550 g (kg DM)-1). Hence, an expected, increase NDF content with decreased concentrate was partially offset by an increase in the pasture proportion relatively low in NDF. This is in agreement with studies conducted in southern Brazil, which have shown that the actual enteric CH4 emissions may decrease with inclusion of temperate pastures in cows receiving corn silage and soybean meal [60] or increase enteric CH4 emissions when dairy cows grazing a temperate pasture was supplemented with corn silage [61]. Additionally, enteric CH4 emissions did not differ between dairy cows receiving TMR exclusively or grazing a tropical pasture in the same scenarios as in this study [26].
 
 ### Emissions from excreta and feed production